《神经元》:蒲慕明小组发现泛素连接酶修饰途径
研究人员发现经PKA依赖性磷酸化修饰的Smad泛素化调节因子1(Smad ubiquitination regulatory factor 1,Smurfl)能启动泛素连接酶在两种蛋白(轴突发育过程中完全不同的功能)中的选择活性,这对于解释局部细胞功能中蛋白选择性降解具有重要的意义。
Phosphorylation of E3 Ligase Smurf1 Switches Its Substrate Preference in Support of Axon Development http://www.cell.com/neuron/abstract/S0896-6273(10)01069-X
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A-query: E3 Ligase C-query: Axon Development
The B-list contains title words and phrases (terms) that appeared in both the A and the C literature. 38 articles appeared in both literatures and were not included in the process of computing the B-list but can be viewed here . The results of this search are saved under id # 2132 and can be accessed from the start page after you leave this session. There are 1198 terms on the current B-list (578 are predicted to be relevant), which is shown ranked according to predicted relevance. The list can be further trimmed down using the filters listed in the left margin.
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job id # 2132 started Sun Jan 30 07:23:57 2011 Max_citations: 50000 Stoplist: /var/www/html/arrowsmith_uic/data/stopwords_pubmed Ngram_max: 3 2132 Search ARROWSMITH A A_query_raw: E3 Ligase Sun Jan 30 07:24:22 2011 A query = E3 Ligase started Sun Jan 30 07:24:22 2011 A query resulted in 13683 titles 2132 Search ARROWSMITH C C_query_raw: Axon Development Sun Jan 30 07:24:38 2011 C: Axon Development 15954 A: pubmed_query_A 13683 AC: ( E3 Ligase ) AND ( Axon Development ) 38 C query = Axon Development started Sun Jan 30 07:24:39 2011 C query resulted in 15954 titles A AND C query resulted in 38 titles 10766 B-terms ready on Sun Jan 30 07:28:01 2011 Sem_filter: Genes & Molecular Sequences, and Gene & Protein Names 1198 B-terms left after filter executed Sun Jan 30 07:37:15 2011
B-list on Sun Jan 30 07:39:34 2011 1 jak stat 2 synaptotagmin 3 jnk 4 wnt 5 mecp2 6 akt 7 vegf 8 mtor 9 erk1 10 huntingtin 11 zinc finger protein 12 c jun n 13 paxillin 14 ftdp-17 15 beta catenin 16 smad 17 neurotrophin 18 nfat 19 p27kip1 20 caspase 21 cyclin dependent kinase 22 phosphatidylinositol 3-kinase 23 pi3k 24 syntaxin 25 homeodomain protein 26 reelin 27 socs2 28 kruppel 29 pink1 30 cxcr4 31 pten 32 snon 33 n myc 34 cdk5 35 notch1 36 map kinase 37 erbb3 38 runx3 39 trk 40 sod1 41 estrogen receptor alpha 42 eif4e 43 pax6 44 toll receptor 45 sh2 46 gene zebrafish 47 smad7 48 gli3 49 neuregulin 50 c jun 51 hox 52 caspase-3 53 nurr1 54 lim domain 55 frizzled 56 microrna 57 katanin 58 jak 59 smad3 60 signal regulated kinase 61 protein kinase b 62 ephrin 63 bax 64 presenilin 65 hox gene 66 glycogen synthase 67 aryl hydrocarbon receptor 68 kinesin 69 sh3 70 ret 71 runx2 72 casein kinase 73 glycogen synthase kinase 74 synaptophysin 75 fmr1 76 e cadherin 77 crk 78 gsk-3beta 79 liprin alpha 80 erbb2 81 hnrnp 82 c myc 83 gap-43 84 gsk3 85 kcnq2 86 importin 87 exon 88 ets 89 cdc42 90 lim domain binding 91 eaat4 92 jnk1 93 gene family 94 early gene 95 genome wide 96 vav 97 cd38 98 gene encode a 99 claudin 100 bmp 101 bace1 102 bcl-2 103 p38 104 bhlh 105 ikk 106 nf kappab 107 sp1 108 wld 109 gsk3beta 110 receptor tyrosine kinase 111 smad6 112 protein tyrosine kinase 113 arrestin 114 spectrin 115 smad4 116 cbp p300 117 rho gtpase 118 fgf 119 s100b 120 tumor suppressor gene 121 tak1 122 c kit 123 rac1 124 fgf receptor 125 par6 126 bone morphogenetic protein 127 stat3 128 p70s6k 129 protein tyrosine phosphatase 130 gal4 131 tgfbeta 132 p38 mapk 133 proto oncogene 134 repressor 135 myocardin 136 sonic hedgehog 137 p73 138 gene encode 139 candidate gene 140 immediate early gene 141 sorting nexin 142 cadherin 143 hsv-1 144 ampa 145 rhoa 146 dystrophin 147 nkx2 148 endostatin 149 runx1 150 erbb4 151 bcr abl 152 ck2 153 ubiquitin 154 tau protein 155 microtubule associated protein 156 tyrosine phosphatase 157 mms2 158 occludin 159 zinc finger gene 160 retinoblastoma protein 161 cyclin d1 162 abl 163 nicastrin 164 liprin 165 hdac6 166 tfiih 167 laminin 168 vpr 169 transcription factor 170 ankyrin 171 csn5 172 rnai 173 myod 174 glutamate receptor 175 abl tyrosine kinase 176 leukemia inhibitory factor 177 jab1 csn5 178 kv1 179 hsp70 180 insulin receptor substrate 181 jab1 182 src 183 wee1 184 netrin-1 185 egfr 186 cxcl12 187 mitofusin 188 autophagy 189 proline rich 190 creb 191 erk 192 moesin 193 c abl 194 pax2 195 eralpha 196 tyrosine kinase 197 jnk3 198 nck 199 beta tubulin 200 tgf beta 201 cyclin 202 dlg 203 transgene 204 p130 205 fez1 206 dysbindin 207 npc2 208 kruppel factor 209 mkp-1 210 lim homeodomain 211 gsk-3 212 p19 213 fak 214 gene alzheimer 215 robo 216 topoisomerase 217 btb 218 fzr 219 vitronectin 220 tyrosine kinase receptor 221 sprouty2 222 transmembrane protein 223 erbb 224 calcium sensing receptor 225 p120 226 chemokine receptor 227 p75 228 cbp 229 jun 230 nav1 231 hif-1alpha 232 protooncogene 233 bcl 234 p2x 235 cell cycle progression 236 estrogen receptor 237 caspase-9 238 cb1 239 jak1 240 receptor kinase 241 trpv1 242 myf5 243 ebf2 244 stat 245 p75ntr 246 bcr 247 cell adhesion molecule 248 kelch 249 chaperone 250 fibroblast growth factor 251 gene bax 252 alternative promoter 253 rna binding 254 p300 255 akt pkb 256 prion protein 257 tc10 258 motor neuron disease 259 protein kinase c 260 erm 261 gene encoding 262 serum response factor 263 ack1 264 pyk2 265 tumor suppressor 266 intersectin 267 gene alzheimer disease 268 lim 269 immunophilin 270 myc 271 gaba a receptor 272 septin 273 igf-1 274 dynamin 275 fe65 276 myostatin 277 ppargamma 278 activin 279 histone deacetylase 280 hepatocyte growth factor 281 quaking 282 gtpase 283 egf 284 necdin 285 pkc 286 bcl xl 287 p caf 288 wt1 289 pkb 290 helix loop helix 291 p53 292 enhancer 293 hedgehog 294 cofilin 295 r7 296 hdac 297 dlx 298 androgen receptor 299 integrin alpha 300 e box 301 notch 302 neuropilin 303 cdna 304 rna binding protein 305 fyn 306 potassium channel 307 matrix metalloproteinase 308 pi 3-kinase 309 ncam 310 eg5 311 oncogene 312 p65 313 ephb 314 cdh1 315 par-6 316 tsc1 317 nf1 318 syndrome gene 319 mdx 320 cln6 321 rgs 322 gene promoter 323 shp-2 324 reaper 325 promoter activity 326 gata-2 327 differentially expressed gene 328 enac 329 guanylyl cyclase 330 abeta 331 cpeb 332 tdp-43 333 expression gene 334 myosin heavy chain 335 sdf-1 336 apaf-1 337 gene caenorhabditis elegans 338 calpain 339 mid1 340 gadd45a 341 nogo a 342 adaptor 343 arf6 344 tyrosine hydroxylase 345 nrf2 346 follistatin 347 calponin 348 g2 349 h2b 350 camkii 351 chemokine 352 nucleolin 353 app 354 rac gtpase 355 suppressor gene 356 foxa2 357 psd-95 358 igf 359 c fos 360 abl kinase 361 early growth response 362 cln2 363 signal regulating 364 pp2a 365 dna binding 366 psa 367 myb 368 igf i 369 retinoic acid induced 370 g1 371 tumor suppressor activity 372 c met 373 numb 374 gene involved 375 epidermal growth factor 376 annexin 377 calcium binding protein 378 related gene 379 eaat2 380 gene related 381 vcam-1 382 alpha tubulin 383 integrin 384 tau 385 clusterin 386 ef hand 387 tubulin 388 gamma tubulin 389 t cadherin 390 ephb1 391 gaba a 392 calmodulin 393 sek1 394 proto 395 protein phosphatase 396 sapk 397 lacz 398 cd99 399 retinoblastoma 400 tieg1 401 gef 402 morphogen 403 nf 404 epha 405 snare 406 3p 407 glia 408 rim1 409 cortactin 410 retinoic acid receptor 411 pax3 412 survivin 413 isoform 414 tau phosphorylation 415 regulatory region 416 vimentin 417 protein phosphatase 2a 418 gene associated 419 versican 420 wallerian degeneration 421 tumor suppressor p53 422 dna binding protein 423 dcc gene 424 tau gene 425 atm 426 protein kinase 427 histone acetyltransferase 428 14-3-3epsilon 429 bfgf 430 programmed cell death 431 six1 432 insulin growth factor 433 lif 434 rac 435 abi-1 436 promoter 437 scribble 438 p21 439 multigene family 440 il-6 441 rap1 442 expression c jun 443 glioma 444 toll 445 catalytic domain 446 rab5 447 c src 448 egr2 449 dpp 450 rapsyn 451 cd2 452 p35 453 coiled coil 454 hgf sf 455 apc2 456 actin binding 457 th1 458 ebf1 459 zo-1 460 ephrinb2 461 gli2 462 p0 463 nuclear localization signal 464 novel gene 465 box 466 gene japanese 467 transporter 468 xbp1 469 tyrosine hydroxylase promoter 470 ras gap 471 ahr 472 dj-1 473 nr2b 474 il-1 475 gaba 476 l1 477 response element 478 reporter gene 479 promoter human 480 cd95 481 cd45 482 intron 483 talin 484 cancer gene 485 fibronectin 486 ras 487 insulin receptor 488 lacz gene 489 crest 490 alix 491 fk506 492 ephb4 493 coxsackievirus adenovirus receptor 494 hgf 495 3a 496 epha2 497 ww 498 s100 499 gamma subunit 500 genomic 501 gene glioma 502 nodal 503 o glcnac 504 lyn 505 peroxisome 506 ror2 507 d1 508 chop 509 gene regenerating 510 heat shock protein 511 wnt5a 512 characterization promoter 513 cue 514 rhoa signalling 515 dcc 516 erythropoietin receptor 517 gene transfer 518 transgene expression 519 apoe 520 rho 521 cytoskeletal protein 522 apolipoprotein e 523 olfactory 524 cd15 525 p400 526 tat 527 rhodopsin 528 acetyltransferase 529 ig 530 gabaa 531 upstream regulatory region 532 posh 533 drosophila tumor suppressor 534 senescence 535 regulation tumor suppressor 536 sigma 537 ssdp 538 apc1 539 bcl x 540 histone 541 ephrin a1 542 anaplastic lymphoma kinase 543 alzheimer disease 544 dbl 545 c3d 546 phosphatase tensin homolog 547 3c 548 raf 549 nogo 550 s6 551 genome screen identify 552 tnfalpha 553 endoplasmic reticulum 554 satb2 555 intron containing 556 alk 557 g protein 558 daf-2 559 metalloprotease 560 neu 561 gene not 562 docking protein 563 transthyretin 564 adducin 565 bcl x l 566 gene a 567 aromatase 568 tnf 569 il-1beta 570 dopamine d2 receptor 571 spontaneous seizure 572 high mobility group 573 mhc 574 bag1 575 methyltransferase 576 regulated gene developing 577 gamma1 578 actin 579 copy 580 git1 581 mpp 582 cd4 583 lobe 584 target tumor suppressor 585 hydroxylase gene 586 nuclear protein 587 fc
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