文章：GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data （2016.03）

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777721/

文章：TruSPAdes: barcode assembly of TruSeq synthetic long reads  2016  （http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3737.html）

文章：InteMAP: Integrated metagenomic assembly pipeline for NGS short reads  2015 （http://www.ncbi.nlm.nih.gov/pubmed/26250558）

文章：Xander: employing a novel method for efficient gene-targeted metagenomic assembly  2015 （http://www.ncbi.nlm.nih.gov/pubmed/26246894）

文章：IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth  2012  （http://www.ncbi.nlm.nih.gov/pubmed/22495754）

文章：Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly  2015  （http://www.ncbi.nlm.nih.gov/pubmed/25790784）

文章：DIME: a novel framework for de novo metagenomic sequence assembly  2015  （http://www.ncbi.nlm.nih.gov/pubmed/25684202）

文章：SFA-SPA: a suffix array based short peptide assembler for metagenomic data  2015  (http://www.ncbi.nlm.nih.gov/pubmed/25637561)

文章：An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomicnext-generation sequencing data  2015  （http://www.ncbi.nlm.nih.gov/pubmed/25586223）

文章：MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning  2015  （http://www.ncbi.nlm.nih.gov/pubmed/25431440）、

文章：Improved assemblies using a source-agnostic pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of contigs  2014  （https://www.ncbi.nlm.nih.gov/pubmed/25270300）