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http://www.ncbi.nlm.nih.gov/gene/?term=middle+east+respiratory+syndrome

Organism Overview ; Genome Assembly and Annotation report [1]

Middle East respiratory syndrome coronavirus   Middle East respiratory syndrome coronavirus RefSeq Genome                             Lineage:                             Viruses[4614]; ssRNA viruses[1244]; ssRNA positive-strand viruses, no DNA stage[982]; Nidovirales[62]; Coronaviridae[44]; Coronavirinae[40]; Betacoronavirus[13]; unclassified Betacoronavirus[6]; Middle East respiratory syndrome coronavirus[1]

Middle East respiratory syndrome coronavirus genome reference project

Publications Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans. van Boheemen S, et al. MBio 2012 Nov 20 Representative (genome information for reference and representative genomes) Reference genome: [see all organisms] Middle East respiratory syndrome coronavirus ViralProj183710 Submitter: NCBI RefSeq Genome Project                        Type                                            Name                                            RefSeq                                            INSDC                                                                                        Size (Kb)                                                    GC%                                                Protein                                                    Gene                         Segment Unknown NC_019843.3 JX869059.2 30.12 41.2 11 10                 Genome Region Go to nucleotideGraphicsFASTAGenBank

http://www.ncbi.nlm.nih.gov/genome/?term=middle+east+respiratory+syndrome

A-query: middle east respiratory syndrome
C-query: GENE

The B-list contains title words and phrases (terms) that appeared in both the A and the C literature. 1219 articles appeared in both literatures and were not included in the process of computing the B-list but can be viewed here. The results of this search are saved under id # 28564 and can be accessed from the start page after you leave this session. There are 715 terms on the current B-list (214 are predicted to be relevant), which is shown ranked according to predicted relevance. The list can be further trimmed down using the filters listed in the left margin.

To assess whether there appears to be a biologically significant relationship between the AB and BC literatures for specific B-terms, please select one or more B-terms and then click the button to view the corresponding AB and BC literatures. Use Ctrl to select multiple B-terms.

job id # 28564 started Sat Jun 6 23:54:45 2015
Max_citations: 50000
Stoplist: /var/www/arrowsmith_uic/data/stopwords_pubmed
Ngram_max: 3
A_query_raw: middle east respiratory syndromeSat Jun 6 23:55:08 2015

A query = middle east respiratory syndrome started Sat Jun 6 23:55:09 2015
A query resulted in 8600 titles
C_query_raw: GENE Sat Jun 6 23:55:21 2015

C: GENE 2044904

A: middle east respiratory syndrome 8600

AC: ( middle east respiratory syndrome ) AND ( GENE ) 1219

C_query_raw: GENE Sat Jun 6 23:55:25 2015

C: GENE 2044904

A: middle east respiratory syndrome 8600

AC: ( middle east respiratory syndrome ) AND ( GENE ) 1219

C query = GENE started Sat Jun 6 23:55:25 2015
C query resulted in 50000 titles
A AND C query resulted in 1219 titles
11885 B-terms ready on Sat Jun 6 23:57:13 2015

Sem_filter:
Genes & Molecular Sequences, and Gene & Protein Names
715 B-terms left after filter executed Sun Jun 7 00:15:40 2015

Sem_filter:
Genes & Molecular Sequences, and Gene & Protein Names
715 B-terms left after filter executed Sun Jun 7 00:15:52 2015

B-list on Sun Jun 7 00:16:22 2015
1 vegf
2 toll receptor
3 nkg2d
4 p38 mapk
5 caspase
6 g quadruplex
7 dc sign
8 drb1
9 akt
10 tmprss2
11 cyclophilin
12 stat1
13 defensin
14 mtor
15 ccr5
16 mannose binding lectin
17 nucleocapsid protein
18 tlr7
19 helicase
20 il-10
21 pi3k
22 foxp3
23 cxcl10
24 cov
25 coronavirus genome
26 genome sequencing
27 p38
28 chemokine
29 sirtuin
30 e6
31 perforin
32 beta defensin
33 cd8
34 il-23
35 cytokine production
36 hla a
37 ubiquitin
38 chemokine receptor
39 lc3
40 il-21
41 rna binding
42 tnf alpha
43 bag3
44 hmgb1
45 rna helicase
46 foxo
47 virus genome
48 autophagy
49 toll
50 3c
51 flu
52 metabolic syndrome
53 rt
54 fasl
55 pcr
56 drb1 allele
57 tnf
58 ace2
59 deubiquitinating enzyme
60 nsp5
61 ifn gamma
62 hypothetical protein
63 cd4
64 il-1beta
65 ip-10
66 cxcr2
67 rna binding protein
68 cxcr3
69 cxcl9
70 packaging signal
71 il-12
72 formyl peptide receptor
73 hedgehog
74 isoform
75 alpha2b
76 ifn
77 nsp4
78 il-15
79 frameshift
80 demyelination
81 pkr
82 trail
83 genomic sequencing
84 rna polymerase
85 ptx3
86 cdna
87 transcription factor
88 cd28
89 il-8
90 th1
91 cd26
92 p90rsk
93 amino acid transporter
94 il-13
95 tetraspanin
96 genome wide
97 polyprotein
98 hla
99 xbp1
100 l sign
101 cpg
102 rig i
103 rrna
104 ire1
105 cho
106 erk
107 tks
108 kit
109 tcm
110 epidermal growth factor
111 ptsd
112 cytokine
113 fip
114 copd
115 ctl
116 open reading frame
117 genomic
118 fas ligand
119 microtubule associated protein
120 reading frame
121 spike
122 8-cineole
123 ccl2
124 stat
125 heparan sulfate proteoglycan
126 p42
127 adeno
128 thrombomodulin
129 programmed cell death
130 gilt
131 serum amyloid a
132 polymerase
133 fgl2
134 genome
135 obesity
136 mars
137 exonuclease
138 cd40
139 nk
140 rna
141 replicon
142 dipeptidyl peptidase
143 sp d
144 cd25
145 body mass index
146 domain
147 ns2
148 ccr2
149 tcr
150 adam17
151 macrophage activation
152 terminator
153 ga
154 beta barrel
155 synergistic antiviral effect
156 3a
157 annexin
158 mhc
159 interleukin
160 non structural protein
161 envelope protein
162 cathepsin l
163 rnase
164 major histocompatibility complex
165 imp
166 nude
167 immune response
168 s1
169 annexin a2
170 integrin
171 tau
172 endoplasmic reticulum
173 th2
174 body mass
175 kinase
176 cardiomyopathy associated
177 pig a
178 bat
179 pup
180 bone mineral density
181 plp2
182 asia
183 eae
184 cd200
185 peptidase
186 beta actin
187 beacon
188 methyltransferase
189 interferon alpha
190 mitochondrial
191 cd13
192 inducible
193 scid
194 lux
195 hypobaric hypoxia
196 ros
197 multiple sclerosis
198 killer
199 prof
200 x4
201 interferon
202 rsv
203 transporter
204 interferon gamma
205 dot
206 protease
207 nos2
208 raby
209 hip
210 ig
211 cv
212 t pa
213 clone
214 pk1

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