文章： A survey of best practices for RNA-seq data analysis 2016 ( http://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0881-8 ) 文章：A comparison of methods for differential expression analysis of RNA-seq data 2013 （ https://bmcbioinformatics.bi ...
文章： EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data 2016 （ https://www.ncbi.nlm.nih.gov/pubmed/26582919 ） 文章： HPMCD: the database of human microbial communities from metagenomic datasets and microbial r ...
文章： Partial Least Squares Regression Can Aid in Detecting Differential Abundance of Multiple Features in Sets of Metagenomic Samples 2015 （ http://www.ncbi.nlm.nih.gov/pubmed/26734061 ） 文章： A robust approach for identifying differentially abundant features i ...
文章： EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation 2016 （ http://www.ncbi.nlm.nih.gov/pubmed/26896844 ） 文章： Network construction and structure detection with metagenomic count data 2015 （ ...
文章：GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data （2016.03） https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777721/ 文章： TruSPAdes: barcode assembly of TruSeq synthetic long ...
文章： Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes 2016 （ https://www.ncbi.nlm.nih.gov/pubmed/27067514 ） 文章： MetaCRAM: an integrated pipeline for metagenomic taxonomy identi ...
Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface 2013 （ http://www.ncbi.nlm.nih.gov/pubmed/23871656 ） Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amp ...
Comparison of direct boiling method with commercial kits for extracting fecal microbiome DNA by Illumina sequencing of 16S rRNA tags 2013 （ http://www.ncbi.nlm.nih.gov/pubmed/23899773 ）
对于16s的数据，为了分析在不同group中丰度差异显著的菌群，2009年出现了工具Metastats（ Metastats: an improved statistical method for analysis of metagenomic data），本文对此工具的用法进行了简单阐述。 第一，此工具提供了web服务，详见 http://metastats.cbcb.umd.edu/detect ...
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