文章: Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes 2016 ( https://www.ncbi.nlm.nih.gov/pubmed/27067514 ) 文章: MetaCRAM: an integrated pipeline for metagenomic taxonomy identi ...
Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface 2013 ( http://www.ncbi.nlm.nih.gov/pubmed/23871656 ) Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amp ...
Comparison of direct boiling method with commercial kits for extracting fecal microbiome DNA by Illumina sequencing of 16S rRNA tags 2013 ( http://www.ncbi.nlm.nih.gov/pubmed/23899773 )
对于16s的数据,为了分析在不同group中丰度差异显著的菌群,2009年出现了工具Metastats( Metastats: an improved statistical method for analysis of metagenomic data),本文对此工具的用法进行了简单阐述。 第一,此工具提供了web服务,详见 http://metastats.cbcb.umd.edu/detect ...
The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies 2015 ( http://www.ncbi.nlm.nih.gov/pubmed/25880246 ) 16S rRNA gene high-throughput sequencing data mining of microbial diversity and interactions 2015 ( http://www.ncbi.nlm.nih.gov/pubmed/25808518 ...
文章: A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling 2016 ( http://www.ncbi.nlm.nih.gov/pubmed/26763898 ) 文章: Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering ...
Vikodak - A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets 2016 ( https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4746064/ ) A n integrated strategy for functional analysis of microbial communities based on gene ontology and ...
文章: Studying long 16S rDNA sequences with ultrafast- metagenomic sequence classification using exact alignments (Kraken) 2016 ( https://www.ncbi.nlm.nih.gov/pubmed/26812576 ) 文章: A novel semi-supervised algorithm for the taxonomic assignment of metagenomic re ...