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热图画的方法
肖斌 2016-2-25 15:25
matrix2png: http://www.chibi.ubc.ca/matrix2png/ Heal: http://hemi.biocuckoo.org heatmap: http://blog.sina.com.cn/s/blog_83f77c940101k9xd.html ggplot2: http://blog.sina.com.cn/s/blog_7948610e01014tag.html
个人分类: R语言画图|3840 次阅读|没有评论
Scikit-bio 生物信息学软件开发包
肖斌 2016-2-25 11:44
http://scikit-bio.org : scikit-bio is an open-source, BSD-licensed, python package providing data structures, algorithms, and educational resources for bioinformatics.
个人分类: python|2648 次阅读|没有评论
画曼哈顿图与QQ图
肖斌 2016-2-25 11:39
如何使用Python绘制GWAS分析中的曼哈顿图和QQ图 : http://www.stbioinf.com/2016/02/02/How-to-create-manhattan-and-qq-plot-for-GWAS-study-in-Python.html R语言画曼哈顿图: http://blog.sina.com.cn/s/blog_403aa80a01017217.html
个人分类: R语言画图|7438 次阅读|没有评论
metagenomics与colorectal cancer的研究文章
肖斌 2016-2-23 16:20
文章: Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer 2015 ( http://www.ncbi.nlm.nih.gov/pubmed/26408641 )
个人分类: 科研文章|2216 次阅读|没有评论
RNA-seq分析方法和工具的文章
肖斌 2016-2-22 12:44
文章: A survey of best practices for RNA-seq data analysis 2016 ( http://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0881-8 ) 文章:A comparison of methods for differential expression analysis of RNA-seq data 2013 ( https://bmcbioinformatics.bi ...
个人分类: 科研文章|3028 次阅读|没有评论
DNA变异注释数据库
肖斌 2016-2-22 11:58
文章: Improving databases for human variation 2016 ( http://www.nature.com/nmeth/journal/v13/n2/full/nmeth.3762.html )
个人分类: 科研文章|2159 次阅读|没有评论
metagenomics的数据库
肖斌 2016-2-21 21:38
文章: EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data 2016 ( https://www.ncbi.nlm.nih.gov/pubmed/26582919 ) 文章: HPMCD: the database of human microbial communities from metagenomic datasets and microbial r ...
个人分类: 科研文章|1963 次阅读|没有评论
metagenomics差异分析工具的文章
肖斌 2016-2-21 21:24
文章: Partial Least Squares Regression Can Aid in Detecting Differential Abundance of Multiple Features in Sets of Metagenomic Samples 2015 ( http://www.ncbi.nlm.nih.gov/pubmed/26734061 ) 文章: A robust approach for identifying differentially abundant features i ...
个人分类: 科研文章|2163 次阅读|没有评论
metagenomic数据的注释
肖斌 2016-2-21 20:59
文章: EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation 2016 ( http://www.ncbi.nlm.nih.gov/pubmed/26896844 ) 文章: Network construction and structure detection with metagenomic count data 2015 ( ...
个人分类: 科研文章|2137 次阅读|没有评论
metagenomics组装工具的文章
肖斌 2016-2-19 09:35
文章:GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data (2016.03) https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777721/ 文章: TruSPAdes: barcode assembly of TruSeq synthetic long ...
个人分类: 科研文章|2918 次阅读|没有评论

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