VMD (分子可视化软件)

【URL】 http://www.ks.uiuc.edu/Research/vmd/

LINUX_64 OpenGL, CUDA (Linux (64-bit Intel/AMD x86) with CUDA)
安装过程
(1)修改configure文件
   $install_bin_dir=/home/＊＊/vmd/bin
    $install_library_dir=/home/**/vmd/lib
(2)./configure
(3)cd src  
   make install
显示 :make sure /home/yc/vmd in your path
       VMD installation complete.Enjoy!
(4)cp /home/**/vmd/bin/vmd /usr/local/bin
(5)vmd即可以出现图形界面

【作者】 Biophysics Group,University of Illinois at Urbana-Champaign (UIUC)

【语言版本】 English

【收费情况】  免费

【用途】 VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS-X, Unix, or Windows, is distributed free of charge, and includes source code.

VMD is designed for the visualization and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer. VMD uses OpenGL to provide high performance 3-D molecular graphics。

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