祝贺一下，第一篇Scientometrics论文终于正式刊出啦！ 感谢各位合作者：中国科学院武汉文献情报中心王桂芳博士，武汉大学董克博士，厦门大学曹慕昆副教授。 The Journal’s Integrated Impact Index: a new indicator for journal evaluation Tingcan Ma, Gui-Fang Wang, Ke Dong and Mukun Cao Scientometrics Volume 90, Number 2, 649-658, DOI: 10.1007/s11192-011-0538-z http://www.springerlink.com/content/443l672555858k66/ 文章综合考虑期刊的总被引次数、篇均被引次数（影响因子），以及所有对比期刊的平均水平，提出了一种新的期刊评价指标（Journal's Integrated Impact Index ，JIII）。对比研究结果表明，JIII可以更好地反映出一种期刊的真实综合影响力。 In this paper, a new indicator, the Journal's Integrated Impact Index has been proposed. The JIII is based on JCR data, and takes into account one journal's average citations per paper, total citations, and all journals' average level. We are trying to characterize the integrated impact of journals. The multivariate comparisons with other bibliometric indicators show that there are some interesting properties of the new index. Using JIII, it is easy to find those journals whose JIF is not very high, but actually with good comprehensive influence. On the other hand, the distribution of citations agrees with the 80/20 rule when we analyze journals by JIII.
Research Papers:International Trade http://www.internationaleconomics.net/research-trade.html Trade Theory Trade Policy Political Economy of Trade Empirical Trade Studies Regional/Multilateral Integration Agreements Trade Theory The Structure of Simple General Equilibrium Models Jones, R.W. (1965) Abstract: The purpose of this article is to analyze the structue of the simple competitive model of production in a manner designed to highlight both the dual relationship and the similarity that exists among a number of traditional problems in comparative statics and economic growth. Comparative Advantage, Trade, and Payments in a Ricardian Model with a Continuum of Goods Dornbusch, R., S. Fischer P.A. Samuelson (1977) Abstract: This paper discusses Ricardian trade and payments theory in the case of a continuum of goods. The analysis thus extends the development of many-commodity, two-country comparative advantage analysis. Perhaps surprisingly, the continuum assumption simplifies the analysis neatly in comparison with the discrete many-commodity case. Short-Run Capital Specificity and the Pure Theory of International Trade Neary, J.P. (1978) Abstract: The aim of this article is threefold. First, it presents a new diagrammatic technique to illustrate the short-run capital specificaity adjustment process in a small open economy. Second, the implications of the short-run capital specificity adjustment process are examined in the context of an open economy with pre-existing factor market distortions. The third aim of the paper is to point out the central role of the asumption of intersectoral capital mobility in international trade theory. Scale Economies, Product Differentiation, and the Pattern of Trade Krugman, P.R. (1980) Abstract: The basic model of this paper is one in which there are economies of scale in production and firms can costlessly differentiate their products. In this model, which is derived from recent work by Dixit and Stiglitz, equilibrium takes the form of Chamberlinian monopolistic competition. When two imperfectly competitive economies of this kind are allowed to trade, increasing returns produce trade and gains from trade even if the economies have identical tastes, technology, and factor endowments. Decreasing Costs in International Trade and Frank Graham's Argument for Protection Ethier, W.J. (1982) Abstract: Over half a century ago Frank Graham argued that decreasing costs could justify protection. Although this contention stimulated a large literature, a correct analysis has never been made. The present paper attempts to fill this gap. It is shown that a greater degree of increasing returns actually reduces its likelihood. Furthermore, increasing returns yield a positive analysis nearly completely symmetric to that of Ricardian constant costs. A new analytical tool, the allocation curve, is introduced, with which Marshallian stability is fully analogous to Walrasian instability with offer curves. Market Structure and Foreign Trade: Increasing Returns, Imperfect Competition, and the International Economy Helpman, E. P. Krugman (1999) Abstract: Market Structure and Foreign Trade presents a coherent theory of trade in the presence of market structures other than perfect competition. The theory it develops explains trade patterns, especially of industrial countries, and provides an integration between trade and the role of multinational enterprises. Relating current theoretical work to the main body of trade theory, Helpman and Krugman review and restate known results and also offer entirely new material on contestable markets, oligopolies, welfare, and multinational corporations, and new insights on external economies, intermediate inputs, and trade composition. The Boundaries of Multinational Enterprises and the Theory of International Trade Markusen, J.R. (1995) Abstract: This paper presents a diagrammatic technique to illustrate the short-run capital specificity adjustment process in a small open economy. It also considers the implications of the short-run capital specificity adjustment process in the context of the small open economy with pre-existing factor market distortions. Finally, it points out the central role of the assumption of intersectoral capital mobility in traditional international trade theory. An Empirical Assessment of the Proximity-Concentration Trade-off Between Multinational Sales and Trade Brainard, S.L. (1997) Abstract: This paper empirically investigates the role of transport costs, trade and investment barriers, production scale economies, and firm- specific advantages in determining the use of overseas production relative to exports. The proximity-concentration hypothesis is robust in explaining the share of total sales accounted for by affiliate sales: this share is greater the higher are transport costs and trade barriers and the lower are plant scale economies and investment barriers. Although strictly speaking, the proximity-concentration hypothesis applies to the shares of affiliate sales and exports rather than the levels, the effects of trade and investment barriers on the levels are similar to their effects on the shares, controlling for simultaneity, and so is that of freight factors in the trade estimates. The elasticity of inward and outward net affiliate sales with respect to tariffs is around 0.45, and that with respect to NTBs is an additional 0.17. The elasticity of both imports and exports with respect to freight factors is -1. However, the effect of freight factors on the level of affiliate sales is not robust, and the probability of observing any affiliate sales is increasing in proximity. The overall complementarity between trade and affiliate sales arises in part because relative income and intellectual property intensity increase both. In contrast, affiliate sales and trade move in opposite directions with increases in advertising intensity, suggesting that advertising-intensive products require a local presence. Integration of Trade and Disintegration of Production in the Global Economy Feenstra, R.C. (1998) Abstract: The last few decades have seen a spectacular integration of the global economy through trade. The rising integration of world markets has brought with it a disintegration of the production process, however, as manufacturing or services activities done abroad are combined with those performed at home. I compare several different measures of foreign outsourcing, and argue that they have all increased since the 1970s. I also consider the implications of globalization for employment and wages of low-skilled workers, and for trade and regulatory policy, such as labor standards. The Six Major Puzzles in International Macroeconomics: Is There a Common Cause? Obstfeld, M. K. Rogoff (2000) Abstract: The central claim in this paper is that by explicitly introducing costs of international trade (narrowly, transport costs but more broadly, tariffs, nontariff barriers and other trade costs), one can go far toward explaining a great number of the main empirical puzzles that international macroeconomists have struggled with over twenty-five years. Our approach elucidates J. McCallum's home bias in trade puzzle, the Feldstein-Horioka saving-investment puzzle, the French-Poterba equity home bias puzzle, and the Backus-Kehoe-Kydland consumption correlations puzzle. That one simple alteration to an otherwise canonical international macroeconomic model can help substantially to explain such a broad arrange of empirical puzzles, including some that previously seemed intractable, suggests a rich area for future research. We also address a variety of international pricing puzzles, including the purchasing power parity puzzle emphasized by Rogoff, and what we term "the exchange rate disconnect puzzle." The latter category of riddles includes both the Meese-Rogoff exchange rate forecasting puzzle and the Baxter-Stockman neutrality of exchange rate regime puzzle. Here, although many elements need to be added to our extremely simple model, trade costs still play an essential role. Exports and Information Spillovers Nicita, A. M. Olarreaga (2000) Integration vs Outsourcing in Industry Equilibrium Grossman, G. E. Helpman (2001) Abstract: We develop an equilibrium model of industrial structure in which the organization of firms is endogenous. Differentiated consumer products can be produced either by vertically integrated firms or by pairs of specialized companies. Production of each variety of consumer good requires a unique, specialized component. Vertically integrated firms can manufacture the components they need in the quantity and type that maximizes profits, but they face a relatively high cost of governance. How Reasonable Are Assumptions Used in Theoretical Models? Computational Evidence on the Likelihood of Trade Pattern Changes Abrego, L., R. Riezman J. Whalley (2001) International Trade in Manufactured Products - A Ricardo-Heckscher-Ohlin Explanation with Monopolistic Competition Choudri, E. Hakura, D. (2001) Financial Frictions in Business Cycles, Trade and Growth Wynne, J.L. (2001) A Unified Approach to Intra-Industry Trade and Direct Foreign Investment Markusen, J.R. K.E. Maskus (2001) Who Dies? International Trade, Market Structure, and Industrial Restructuring Bernard, A.B. J.B. Jensen (2001) Financial Development and International Trade: Is There a Link? Beck, T. (2001) Financial Dependence and International Trade Beck, T. (2001) Trade Liberalisation, Product Variety and Growth in a Small Open Economy: A Quantitative Assessment Rutherford, T. D. Tarr (2001) Injury Investigations in Anti-Dumping and the Super-Additivity Effect: A Theoretical Explanation Gupta, P. A. Panagariya (2001) Tariffs, Terms or Trade, and The Real Exchange Rate in and Intertemporal Optimizing Model of the Current Account Edwards, S. (2001) International Trade and the Environment: A Framework for Analysis Copeland, B.R. M.S. Taylor (2001) Do Factor Endowments Matter for North-North Trade? Davis, D.R. D.E. Weinstein (2001) Gravity with Gravitas: A Solution to the Border Puzzle Anderson, J.E. E. van Wincoop (2001) Abstract: The gravity model has been widely used to infer substantial trade flow effects of institutions such as customs unions and exchange rate mechanisms. McCallum found that the US-Canada border led to trade between provinces that is a factor 22 (2,200%) times trade between states and provinces, a spectacular puzzle in light of the low formal barriers on this border. We show that the gravity model usually estimated does not correspond to the theory behind it. We solve the 'border puzzle' by applying the theory seriously. We find that national borders reduce trade between the US and Canada by about 44%, while reducing trade among other industrialized countries by about 30%. McCallum's spectacular headline number is the result of a combination of omitted variables bias and the small size of the Canadian economy. Within-Canada trade rises by a factor 6 due to the border. In contrast, within-US trade rises 25%. The Factor Content of Trade Davis, D.R. D.E. Weinstein (2001) The Merits of Horizontal versus Vertical FDI in the Presence of Uncertainty | Published Aizenman, J. N. Marion (2001) Market Entry Costs, Producer Heterogeneity, and Export Dynamics Das, S., M.J. Roberts J.R. Tybout (2001) Foreign Direct Investors in Three Financial Crises Lipsey, R.E. (2001) Foreign Direct Investment Hatzius, J. (2001) Foreign Direct Investment in a World of Multiple Taxes Desai, M.A. J.R. Hines Jr. (2001) Pollution Havens and Foreign Direct Investment: Dirty Secret or Popular Myth? Smarzynska, B.K. S.J. Wei (2001) Determinants of, and the Relation Between, Foreign Direct Investment and Growth: A Summary of the Recent Literature SURVEY PAPER Lim, E.G. (2001) Foreign Direct Investment and the Operations of Multinational Firms: Concepts, History, and Data Lipsey, R.E. (2001) Home and Host Country Effects of FDI Lipsey, R. (2002) Entrepreneurship in International Trade Rauch, J.E. J. Watson (2002) Bilateral Trade and Opportunism in a Matching Market Ramey, G. J. Watson (2001) Abstract: We develop a model of bilateral contracting in a dynamic market setting. Asset owners must be paired via a matching process in order to form productive relationships involving long-term investments and ongoing effort. Market frictions shape the owners' incentives to invest in the absence of complete contracts. We identify cases in which there exists an optimal positive level of market friction implementing first-best investment levels. We also endogenize the choice between integrated and nonintegrated organizational forms. Changes in structural variables can induce crashes by disrupting existing relationships. Attracting FDI in a Politically Risky World Janeba, E. (2001) Courting FDI: Is Competition Bad? Fernandez-Arias, E., R. Hausmann E. Stein (2001) Trade Integration and Risk Sharing Kraay, A. J. Ventura (2002) Trade Openness and Investment Instability Razin, A., E. Sadka T. Coury (2002) Trade with Labor Market Distortions and Heterogeneous Labor: Why Trade Can Hurt Krishna, K., A. Mukhopadhyay C. Yavas (2002) Trade Integration and Growth Cunat, A. M. Maffezzoli (2002) Foreign Direct Investment in Emerging Markets: Income, Repatriations and Financial Vulnerabillities Lehmann, A.C. (2002) The Rise and Fall of World Trade, 1870-1939 Estevadeordal, A., B. Frantz A.M. Taylor (2002) Abstract: Measured by the ratio of trade to output, the period 1870 1913 marked the birth of the first era of trade globalization and the period 1914 39 its death. What caused the boom and bust? We use an augmented gravity model to examine the gold standard, tariffs, and transport costs as determinants of trade. Until 1913 the rise of the gold standard and the fall in transport costs were the main trade-creating forces. As of 1929 the reversal was driven by higher transport costs. In the 1930s, the final collapse of the gold standard drove trade volumes even lower. Trade and Food Security: Conceptualizing the Linkages Panagariya, A. (2002) Export-Platform Foreign Direct Investment Ekholm, K., R. Forslid J. Markusen (2003) Traders, Cops and Robbers | Published Anderson, J.E. O. Bandiera (2003) Export versus FDI | Published Helpman, E., M.J. Melitz S.R. Yeaple (2003) The Effects of Multinational Production on Wages and Working Conditions in Developing Countries Brown, D.K., A.V. Deardorff R.M. Stern (2003) Firms, Contracts, and Trade Structure | Published Antras, P. (2003) Abstract: Roughly one-third of world trade is intrafirm trade. This paper starts by unveiling two systematic patterns in the volume of intrafirm trade. In a panel of industries, the share of intrafirm imports in total U. S. imports is significantly higher, the higher the capital intensity of the exporting industry. In a cross section of countries the share of intrafirm imports in total U. S. imports is significantly higher, the higher the capital-labor ratio of the exporting country. I then show that these patterns can be rationalized in a theoretical framework that combines a Grossman-Hart-Moore view of the firm with a Helpman-Krugman view of international trade. In particular, I develop an incomplete-contracting, property-rights model of the boundaries of the firm, which I then incorporate into a standard trade model with imperfect competition and product differentiation. The model pins down the boundaries of multinational firms as well as the international location of production, and it is shown to predict the patterns of intrafirm trade identified above. Econometric evidence reveals that the model is consistent with other qualitative and quantitative features of the data. Trade, Growth and the Environment | Published SURVEY PAPER Copeland, B.R. M.S. Taylor (2003) Abstract: For the last ten years environmentalists and the trade policy community have engaged in a heated debate over the environmental consequences of liberalized trade. The debate was originally fueled by negotiations over the North American Free Trade Agreement and the Uruguay round of GATT negotiations, both of which occurred at a time when concerns over global warming, species extinction and industrial pollution were rising. Recently it has been intensified by the creation of the World Trade Organization (WTO) and proposals for future rounds of trade negotiations. The debate has often been unproductive. It has been hampered by the lack of a common language and also suffered from little recourse to economic theory and empirical evidence. The purpose of this essay is set out what we currently know about the environmental consequences of economic growth and international trade. We critically review both theory and empirical work to answer three basic questions. What do we know about the relationship between international trade, economic growth and the environment? How can this evidence help us evaluate ongoing policy debates? Where do we go from here? The Role of Information in Driving FDI Flows: Host-Country Transparency and Source-Country Specialization Mody, A., A. Razin E. Sadka (2003) Policy designs in a dynamic model of infant industry protection Kaneda, M. (2003) Catch-up in turn in a multi-country international trade model with learning-by-doing and invention Nakajima, T. (2003) Domestic Labour Markets and Foreign Direct Investment Haaland, J. I. Wooton (2003) International Trade under Oligopoly Conditions Ruffin, R.J. (2003) Abstract: The paper gives a simple representation of how oligopoly affects the general theory of international trade. Three points are emphasized: the simplicity of trade under oligopoly in the Ricardian model; the equations describing the general equilibrium of a world economy with any number of goods, countries, and factors under oligopolistic conditions and an integrated world market; and a complete description of the solution of a Mill朢icardo朇ournot model with oligopoly in one sector and perfect competition in the other. The Impact of Trade on Intra-Industry Reallocations and Aggregate Industry Productivity | Published Melitz, M.J. (2003) Abstract: This paper develops a dynamic industry model with heterogeneous firms to analyze the intra-industry effects of international trade. The model shows how the exposure to trade will induce only the more productive firms to enter the export market (while some less productive firms continue to produce only for the domestic market) and will simultaneously force the least productive firms to exit. It then shows how further increases in the industry's exposure to trade lead to additional inter-firm reallocations towards more productive firms. The paper also shows how the aggregate industry productivity growth generated by the reallocations contributes to a welfare gain, thus highlighting a benefit from trade that has not been examined theoretically before. The paper adapts Hopenhayn's (1992a) dynamic industry model to monopolistic competition in a general equilibrium setting. In so doing, the paper provides an extension of Krugman's (1980) trade model that incorporates firm level productivity differences. Firms with different productivity levels coexist in an industry because each firm faces initial uncertainty concerning its productivity before making an irreversible investment to enter the industry. Entry into the export market is also costly, but the firm's decision to export occurs after it gains knowledge of its productivity. Global Sourcing | Published Antras, P. E. Helpman (2003) Inequality and Trade Mitra, D. V. Trindade (2003) National Treatment and the Choice Between Exports and FDI Hoekman, B. K. Saggi (2003) Conditions for Factor Price Equalization in the Integrated World Economy Model Qi, L. (2003) Aid versus Trade Revisited: Donor and Recipient Policies in the Presence of Learning-by-Doing Adam, C.S. S. A O'Connell (2003) Financial Globalization, Portfolio Diversification, and the Pattern of International Trade Koren, M. (2003) Tariffs and the Great Depression Revisited Crucini, M.J. J. Kahn (2003) Optimal Integration Strategies for the Multinational Firm | Published Grossman, G.M., E. Helpman A. Szeidl (2003/06) Abstract: We examine integration strategies of multinational firms that face a rich array of choices of international organization. Each firm in an industry must provide headquarter services from its home country, produce intermediate inputs, and assemble the intermediate goods into final products. Both production of intermediate goods and assembly can be performed at home, in another Northern' country, in the low-wage South,' or in several of these locations. We study the equilibrium choices of firms that differ in productivity (and thus size), focusing on the role of industry characteristics such as the fixed costs of foreign subsidiaries, the cost of transporting intermediate and final goods, and the share of the consumer market that resides in the South in determining optimal integration strategies. International outsourcing and factor prices with multistage production Kohler, W. (2004) Factor Proportions and the Structure of Commodity Trade Romalis, J. (2004) Abstract: This paper examines how factor proportions determine the structure of commodity trade. It integrates a many-country version of a Heckscher-Ohlin model with a continuum of goods with Paul R. Krugman's (1980) model of monopolistic competition and transport costs. The commodity structure of production and bilateral trade is fully determined. Two main predictions emerge. Countries capture larger shares of world production and trade of commodities that more intensively use their abundant factors. Countries that rapidly accumulate a factor see their production and export structures systematically shift towards industries that intensively use that factor. Both predictions receive support from detailed trade data. Mergers and the Composition of International Commerce Nocke, V. S. Yeaple (2004) Specific Factors, Learning, and the Dynamics of Trade Bajona, C. (2004) The Impact Of Regulatory Stringency On The Foreign Direct Investment Of Global Pharmaceutical Firms Ahlering, B. (2004) Trade, Foreign Direct Investment or Acquisition: Optimal Entry Modes for Multinationals | Published Eicher, T. J.W. Kang (2004/2005) Why Some Firms Export Bernard, A.B. J.B. Jensen (2004) International Trade and Macroeconomic Dynamics with Heterogeneous Firms | Published Ghironi, F. M.J. Melitz (2004) Variety Growth and World Welfare Broda, C. D.W. Weinstein (2004) Learning on the Quick and Cheap: Gains from Trade Through Imported Expertise Markusen, J.R. T.F. Rutherford (2004) Managerial incentives and the international organization of production Grossman, G.M. E. Helpman (2004) A Theory of North-South Trade and Globalization | Published Segerstrom, P. E. Dinopoulos (2004/10) When trade requires coordination Katz, K. A. Matsui (2004) Comparative Advantage and Heterogeneous Firms Bernard, A.B., S. Redding P.K. Schott (2004) The Impact of Trade on Intraindustry Reallocation and Aggregate Industry Productivity: A Comment Baldwin, R.E. F. Robert-Nicoud (2004) Quality, trade, and growth Fan, C.S. (2004) Social Networks and Trade Liberalization Pandey, M. J. Whalley (2004) The Home-Market Effect and Bilateral Trade Patterns Hanson, G.H. C. Xiang (2004) Trade Liberalization with Heterogenous Firms Baldwin, R. R. Forslid (2004) Where Ricardo and Mill Rebut and Confirm Arguments of Mainstream Economists Supporting Globalization Samuelson, P.A. (2004) Abstract: Autarky real per capita well being, does not deny that new technical Chinese progress in goods that America previously had competitive advantage in can, ceteris paribus, lower permanently measurable per capita U.S. real income. Nor does it deny that technical progress in China's export goods can, ceteris paribus, hurt permanently her own net measurable per capita real income itself when demand inelasticity prevails. Ergo, the winds of dynamic comparative advantage cannot be counted on to create in each region new net gains of the gainers assuredly greater than the new net losses of the losers. However, correct Ricardian theory does imply that worldwide real income per capita does gain net, so that winners' winnings will suffice worldwide to more than compensate losers' losings--some cold comfort in a scenario of many semi-autonomous nations. Trade, Tragedy, and the Commons Copeland, B.R. M.S. Taylor (2004) Trade-related Job Loss and Wage Insurance: a Synthetic Review Kletzer, L.G. (2004) Aspects of International Fragmentation Kohler, W. (2004) Schumpeterian Growth, North-South Trade and Wage Rigidity Grieben, W-F. (2004) Sorting It Out: International Trade and Protection With Heterogeneous Workers | Published Ohnsorge, F. D. Trefler (2004/07) Abstract: Each worker brings a bundle of skills to the workplace, for example, quantitative and communication skills. Since employers must take this bundle as a package deal, they choose workers with just the right mix of skills. We show that international differences in the distribution of worker skill bundles梖or example, Japan's abundance of workers with a modest mix of both quantitative and teamwork skills梙ave important implications for international trade, industrial structure, and domestic income distribution. Formally, we model two-dimensional worker heterogeneity and show that the second moments of the distribution of skills are critical, as in the Roy model.
http://iknow.baidu.com/question/92995635.html?fr=qrlcid=194index=3 origin里怎么求拟合曲线的拐点，就是2阶导数0的点 右键单击拟合曲线，set as active 然后选择analysis里面Mathematics里面的 differenciate 然后order改成2 output到另外一个book里面看结果
NAME SYNOPSIS OPTIONS DESCRIPTION General Input Output Blastparsed Fasta formated E-value estimation Next steps using Mirdeep Testing REQUIREMENTS AUTHORS CONTACT NAME Hit2Mirdeep.pl - Converts mapping results into a miRdeep blastparsed and into fasta file SYNOPSIS # Minimal argument call, specifying all required parameters. Hit2Mirdeep.pl --input Mapping_day0_1_i_Eland_against_hsa-wg_unambiguous.txt --reference hsa_whole_genome.fa --output_blast mirdeep_blastparsed.txt --output_fasta mirdeep_fasta.txt OPTIONS --input The input files; Several files may be specified, e.g.: --input file1 --input file2. The input files have to be output files of the script run_Mapping or run_Multimapper. Note that unambiguously and ambiguously mapped reads may be provided for this script. Mandatory parameter. --reference Path to the reference sequence which was used for mapping. Necessary to retrieve information about the length of the chromosomes. Mandatory parameter --output_blast The output file for the mirdeep blastparsed file. Mandatory parameter. --output_fasta The output file for the fasta formated sequences. Mandatory parameter --help Display the help pages DESCRIPTION General Converts a hit-file into a MirDeep blastparsed file and addtionally writes the sequence of the reads into a fasta formated file. This allows to use mirDeep for de-novo miRNA discovery. The mirDeep pipeline may be entered at the step FILTERING UBIQUITOUS ALIGNMENTS using the miRdeep script filter_alignments.pl. Input Mapping results of the script run_Mapping.pl or run_Multimapper.pl. Note that unambiguous and ambiguous mapping results may be provided. For example: 5031||Count=1 TCCCCGCCGGCGGAA chr4 1 0 F 170168086 5217||Count=1 GACCGTCCAACGCAC chr20 1 0 R 59264663 5560||Count=1 ATCGGGTGGTAGCAA chr3 1 0 F 16192245 6184||Count=12 TCCGGGCTACTGCTG chr1 1 0 F 29388851 6209||Count=1 GCAGCCATCGTTTTT chr10 1 0 F 61351707 Output Blastparsed The blastparsed format of miRdeep. For example: id_2437445_x1 16 1..16 chr3 23470805 5193722..5193737 0.04 1.00 32.2 Plus / Plus id_2437560_x1 16 1..16 chr4 18585042 3923870..3923885 0.2 0.88 28.2 Plus / Minus id_2437621_x2 16 1..16 chr3 23470805 23050758..23050773 0.16 0.94 30.2 Plus / Minus id_2437630_x1 16 1..16 chr1 30432563 9024663..9024678 0.04 1.00 32.2 Plus / Minus id_2437645_x1 16 1..16 chr4 18585042 18021856..18021871 0.16 0.94 30.2 Plus / Minus id_2437682_x6 16 1..16 chr1 30432563 24623989..24624004 0.2 0.88 28.2 Plus / Minus id_2437922_x1 16 1..16 chr1 30432563 2847658..2847673 0.2 0.88 28.2 Plus / Plus id_2437937_x1 16 1..16 chr2 19705359 19587044..19587059 0.16 0.94 30.2 Plus / Plus Fasta formated For example: id_1432505_x5 GGGATTGTAGTTCAATTGGTCAGAGCACCGCC id_1464713_x1 CGGTGGGGGCTTCTGGGGCTACGGTCGCGTCT id_1472249_x1 AAGAATGAAGTAGTACGATCGGCGGGCGTTTC id_1495451_x1 AGGGAATGTGACACGTTTAGGCATTCCTCTGC id_1528343_x1 CTCGATGAGTAGGAGGGCGCGGCGGTCGCTTT id_1544022_x1 CGGACTACCTGCACCTGGACAGAAAGACCCGC id_1559551_x1 ATTTATCTTTTTTTTTTTTTTTAAAAAAAAAA This fasta file is required for the miRdeep script auto_blast.pl E-value estimation Short read mappers like Eland, Soap, Seqmap do not provide blast e-values. This is a main problem when converting the Hit format into the mirDeep blastparsed format. We therefore use the following table to obtain approximations for the e-value and the bit score: eff_length e-value bit-score 15 0.2 28.2 15 0.16 30.2 16 0.040 32.2 17 0.015 34.2 18 0.005 36.2 19 0.002 38.2 20 4e-04 40.1 21 1e-04 42.1 22 4e-05 44.1 23 1e-05 46.1 24 3e-06 48.1 25 9e-07 50.0 26 2e-07 52.0 27 7e-08 54.0 28 2e-08 56.0 29 5e-09 58.0 30 1e-09 60.0 30 1e-10 64 The eff_length is calculated: eff_length = read_length - mismatches. The values for this table are derived from the mirDeep example files when mapping the reads to the C. elegans whole genome. They will therefore not reflect the true e-values but they may act as approximations. Next steps using Mirdeep The miRdeep pipeline requires several distinct steps: PREPROCESSING THE READS ALIGNING THE READS TO THE GENOME FILTERING UBIQUITOUS ALIGNMENTS FILTERING BY ANNOTATION PREDICTING MICRORNAS MAKING PERMUTED CONTROLS You can enter the miRdeep pipeline at the step FILTERING UBIQUITOUS ALIGNMENTS using the script: filter_alignments.pl. Testing We tested this script for compatibility with miRdeep using one of our own arabidopsis datasets and predicted, amongst others, the example shown below. A subsequent mirbase search revealed that this is Arabidopsis thaliana miR825 score_star 3.9 score_mfe 1.5 score_freq -3.3 score 2.2 flank_first_end 22 flank_first_seq CTAGTTGATTCCATCGACTCGT flank_first_struct ..(((((((...))))))).(( flank_second_beg 105 flank_second_seq AAGTTG flank_second_struct ...... freq 5 loop_beg 45 loop_end 83 loop_seq TTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGC loop_struct .(((((..(((((..(.....)..)))))..))))).)) mature_arm second mature_beg 84 mature_end 104 mature_query id_493716_x2 mature_seq TTCTCAAGAAGGTGCATGAAC mature_strand + mature_struct ))))).))..))))).))))) pre_seq TCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAAC pre_struct (((.(((((..((.((.(((((.(((((..(((((..(.....)..)))))..))))).))))))).))..))))).))))) pri_beg 1 pri_end 110 pri_id chr2_3461 pri_mfe -36.60 pri_seq CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTG pri_struct ..(((((((...))))))).(((((.(((((..((.((.(((((.(((((..(((((..(.....)..)))))..))))).))))))).))..))))).)))))...... star_arm first star_beg 23 star_end 44 star_read 1 star_seq TCAAGCACCAGCTCGAAGAAGC star_struct (((.(((((..((.((.((((( id_2122663_x2 22 1..22 chr2_3461 110 23..44 2e-06 1.00 44.1 Plus / Plus id_493716_x2 21 1..21 chr2_3461 110 84..104 7e-06 1.00 42.1 Plus / Plus id_201319_x1 21 1..21 chr2_3461 110 85..105 7e-06 1.00 42.1 Plus / Plus REQUIREMENTS Perl 5.8 or higher miRdeep AUTHORS Robert Kofler Heinz Himmelbauer CONTACT robert.kofler at crg.es http://seq.crg.es/download/software/Miro/doc/Hit2Mirdeep.html
Living chemists have been ranked in a league table based on what some argue is the fairest measure of research achievement ever devised. E J Corey, top of the Hirsch rankings E J Corey, top of the Hirsch rankings Top of the 2000-strong pile is Harvard's E J Corey, fighting off competition from George Whitesides and Martin Karplus (both also Harvard). Completing the top five are Kurt Wüthrich and Alan Heeger, while the leading British chemist so far indexed, Alan Fersht, is placed at number 13. The full list is available below ( most recent update4 November 2010. Since this article was written in April 2007, Whitesides and Karplus have overtaken Corey at the top of the table, and more chemists have been indexed. The list below is always the latest update ). The chemists were ranked by h-index, a number invented by physicist Jorge Hirsch in 2005 to measure research impact. A scientist's h-index is the highest number of papers they have published which have each amassed at least that number of citations: Corey, with an h of 138, has published 138 papers which have each received at least 138 citations, for example. By combining quantity and quality, Hirsch argued, the h-index avoids other measures' potential bias: counting total published papers can reward the hard-working but mediocre, while a highly-cited scientist may have inflated their reputation by writing review articles or by sneaking in as co-author on many papers. Henry Schaefer, of the University of Georgia, US, together with colleague Amy Peterson, created the rankings from the ISI Web of Science. Though web-based applications can calculate h-indices, Peterson had to check for misspelt or duplicated names on papers. The list is restricted to living chemists; otherwise John Pople (1925-2004), with an h of 137, would have come top. Schaefer admits that it is not yet comprehensive, and welcomes additions. Though the top 10 won't surprise anyone, said Schaefer, some Nobel prize winners are buried deep down in the table. E O Fischer, for example, squeezes in at joint 251st with an h of 60. That in part reflects the publication culture of previous decades; and in some cases, suggests Schaefer, because the Nobel Prize is awarded for one achievement, while the h-index marks a whole career. Indeed, 'being old is a huge plus', Schaefer notes, as one's h-index can only rise with age. The average age of the top ten chemists is around 70;of the younger scientists, Ad Bax, who researches biophysical NMR spectroscopy at the US National Institutes of Health (aged 50, with an h of 111) is best placed to take the lead. H-indices also seem to vary between different fields of chemistry - of the top 104 in the first version of the list, there were 33 organic chemists and 21 inorganic, but just 5 analytical. Rough and ready as the h-index may be, it has captured the enthusiasm of many chemists, particularly in the US. While some, like Timothy Donohoe at Oxford University, see it as 'a bit of fun, really', Hirsch originally suggested that h-indices could inform funding or tenure decisions which might otherwise be more politically biased. French chemist Christian Bruneau, who works at the National Centre of Scientific Research (CNRS) in Paris, says he has been asked for his h-index (28) by some European research council programmes, and happily includes it on his CV. Nonetheless, says Dieter Lenoir, who works at the National Research Centre for Environment and Health (GSF) in Neuherberg, Germany, and is compiling a detailed list of all German chemists' h-indices, one's h-index doesn't take into account great teaching or great book-writing; while University of Georgia chemistry head John Stickney, who asked his entire faculty for their h-indices, says they should be 'taken with a gram of salt'. 'I don't think you should get hung up on them, but you can't ignore them', Richard Catlow, head of chemistry at University College, London, told Chemistry World . Richard Van Noorden Downloadable Files H index ranking of living chemists Download the document PDF (482k) PDF files require Adobe Acrobat Reader Also of interest Opinion: Bench Monkey Dylan Stiles revels in chemistry's massive protection racket RSC Publishing Nanoscience Highlighting published papers in Nanoscience at the RSC Related Links Comment on this story at the Chemistry World blog Read other posts and join in the discussion FROM http://www.rsc.org/chemistryworld/news/2007/april/23040701.asp
ISI Web of Knowledge Derwent Innovations Index 字段标识（专利） FN 文件名 VR 版本号 PT 出版物类型（书籍、期刊、丛书） PN 专利号 TI 文献标题 AU 发明人 AE 专利权人 GA Derwent 主入藏号 AB 摘要 EA 等同摘要 DC 德温特分类代码 MC 德温特手工代码 IP 国际专利分类 PD 专利详细信息 AD 申请详细信息和日期 FD 更多申请详细信息 PI 优先权申请信息和日期 DS 指定州/国家/地区 FS 检索字段 CP 被引专利 CR 被引文献 DN DCR 号 MN Markush 号 RI 环系索引号 RG Derwent 注册号 ER 记录结束 EF 文件结束
Lenin's guard said famously (in the movie I watched as a child): Dont worry. We will have bread (to eat) tomorrow. For someone who grew up in the 1950s and 1960s, his life today may be a lot better than his fathers. (Of course, this may not be true for everyone.) I didnt have a TV at home when I was a kid, and my son had his own TV even before he could turn it on himself. (It was a 13 TV made in Korea, which I bought when I first arrived in the U.S., a demo without a box for $200. My Korean classmate told me its of good quality, and he was right. It was given away to a mover just before we moved to Hawaii, after having served us for nearly 14 years!) As a parent, I of course wish my sons life will be better than mine. However, will my wish come true? A few years ago, I read some newspaper article on a plane, which was about Europeans in their 20s and 30s. The young people complained about not being able to find good jobs and could only vacation at their parents villa. My old office neighbor, Pat Takahashi, brought this up today, after we enjoyed a forced lunch break without lunch. (See my Blog on The danger of using a toaster at work... ) For those of you who are interested in the IOL (Index of life; or Quality of Life Index), please go to these Web sites: T he index of life_by Takahashi 2009 Quality of Life Index
( 一 ) 年年岁岁总结相似 , 岁岁年年要求不同。 今年年终总结，时兴计件，且有精度和精确要求。文章篇数要精确到个位；影响因子要精确到 0.001 ；引用杜绝自恋，不然不满足他引的要求；还得用那个叫着 h 指数的秤称称你有多重。 ( 二 ) 据说 Scopus author preview （ http://www.scopus.com/search/form/authorFreeLookup.url ）很厉害。只需看一下，他就能告诉，你是谁，你有几斤几两重。 我悄悄蒙上 scopus 的眼睛，在 last name 栏键入 Liu ，在 first name 键入 S, 要他猜猜我是谁。他从 Ministry of Education China ，到 Texas Tech University at Lubbock ，说是要猜 8721 遍，可我一直听不到我的名字。 我悄悄蒙上 scopus 的眼睛，在 last name 栏键入 Liu ，在 first name 键入 Suxia 要他猜猜我是谁。他首先猜 Shandong University School of Medicine ，再到 National Institute of Education, Singapore ，再到 University of Kentucky ， 然后好像是轮到我了，但却偏偏一篇文章给我一个 ID, 罗列数几，宛如一点，一横，一撇，一捺，一竖，一竖钩似地念刘这个字，可见过这样说我的名字 ? 我悄悄蒙上 scopus 的眼睛，在 last name 栏键入 Liu ，在 first name 键入 SX, 要他猜猜我是谁，他干脆沉默一句也不言语，更别提求他说出我的名字。 为什麽光标 search 在颤抖，笑凝结在屏中？我的中文好名字，让我自豪横扫天下，当称网络唯一的好名字啊！难道这网络对我会有所改变，我不再是他的唯一？ 嘿， scopus 只是故意在逗你。 ( 三 ) 李霞大姐曾专门撰文阐述 Blog 中的引用有规可偱吗？ http://www.sciencenet.cn/m/user_content.aspx?id=291992 。我要去问她另外一个问题，如果一个人的文章、博文引用了谁，他（她）知道吗？怎么让他（她）知道？ 我知道好多杂志有 Cite Alert ，但你得预先订。那咱科学网呢？可不可以在发表前，设一个类似发短消息似的机关，帮作者给被引用的博友丢个条子，大声嚷一声， I cite you 。 还有，更难的是，在一不留神，一个举世无双的中文名字，一旦翻译成英文，就变成了沧海一粟的多用名的情况下，怎么能知全谁引用了我？ 你是否会告诉我，以后的孩子，在这个不得不要站在国际舞台打拼的时代，一定别忘了提醒爸妈，在要求给自己取一个用中文写出来独一无二的名字的同时，还要要用英文写出来也唯我独享的名字。 非常非常奇怪的是，虽然很多老外名很简单，譬如 Mary ，譬如 Sunny ，譬如 Ivory ，但他们但凡都有一个不平凡的姓，所以文章，若是跟老外合写，用他们的全名去查，反倒容易被认出来。 ( 四 ) 印象中有这样一套茶具，上面刻着一个这样的字的组合 : 中间是个口，周围是唯、知、吾、足这几个字的不要 口的部分。 唯知吾足 知吾唯足 足知唯吾 吾唯知足 唯吾知足 。。。。。。 转来转去地念，很有意思。 借其一义，赶在年前，送最生龙活虎的祝福给 知吾的 吾知的 将知吾的， 吾将知的 所有的知，所有的友 虎年快乐，虎年幸福，虎年吉祥，虎年健康 ! 还有，对那些科研路上辛勤跋涉的同行，虎年被多知， h 指数增，一年更比一年强！。因为年底又有人要来数数，称重了。 我悄悄蒙上你的眼睛 我悄悄地蒙上你的眼睛 演唱：高明骏 陈艾湄 (男)你悄悄地蒙上我的眼睛 要我猜猜你是谁 从Mary到Sunny和Ivory 就是不喊你的名字 (女)我悄悄地蒙上你的眼睛 让你猜猜我是谁 从Mary到Sunny和Ivory 却始终没有我的名字 (合)为什麽你的双手在颤抖 笑容凝结在你的眼中 难道你对我会所有改变 (女)我不再是你的唯一 (男)我只是故意在逗你
周四讨论班：Supersymmetry Breaking, Witten Index, and Index Condition（刘丽彦） 周四讨论班：Supersymmetry Breaking, Witten Index, and Index Condition（刘丽彦） 时间：待定 地点：18教学楼405室 主讲：刘丽彦 参考文献：B.K. Bagchi, Supersymmetry in Quantum and Classical Mechanics, Chapman Hall/CRC, 2001. 第四章 SUSY Breaking, Witten Index, and Index Condition
Yonghe Zhang ionocovalent theory applications (18) Topological Index Derived from Zhang Effective Principle Quantum Number Based on Zhang Effective Principle Quantum Number , Feng Changjun derived Topological Index which used for total bond energy and lattice energy . Y. Zhang,, Inorg Chem., 1982, 21, 3886 . C.-J. Feng, Chemical Researches., 1999, 10, 2, 57-63.
J.M. Zhao , L.H. Liu. Solution of Radiative Heat Transfer in Graded Index Media by Least Square Spectral Element Method. International Journal of Heat and Mass Transfer . 2007, 50: 2634-2642. download Abstract: Least square spectral element method based on discrete-ordinates equation is extended to solve multidimensional radiative heat transfer problems in semitransparent graded index media. Chebyshev polynomial is employed as expansion set for the spectral element discretization. Five various test problems were taken as examples to verify the least square spectral element formulation for solving radiative heat transfer in semitransparent graded index media. The predicted distributions of temperature and radiative heat flux are determined by the least square spectral element method and compared with data in the references. The results show that the least square spectral element method has good accuracy for solving multidimensional radiative heat transfer problems in semitransparent graded index media.
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