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科学家报道新冠病毒转录组结构
2020-04-24 22:00

韩国基础科学研究所(IBS) Hyeshik Chang、V. Narry Kim等研究人员合作报道了新冠病毒(SARS-CoV-2)的转录组结构。这一研究成果于2020年4月23日在线发表于《细胞》。

利用两种互补的测序技术,研究人员报道了SARS-CoV-2转录组和表观转录组的高分辨率图谱。DNA纳米球测序表明,由于许多不连续的转录事件,转录组非常复杂。除了典型的基因组RNA和9个亚基因组RNA,SARS-CoV-2还可产生编码未知ORF且具有融合、缺失和/或移码的转录本。
 
使用纳米孔直接RNA测序,研究人员进一步在病毒转录本上找到了至少41个RNA修饰位点,具有最频繁的基序AAGAA。修饰的RNA比未修饰的RNA具有较短的poly(A)尾巴,这表明修饰和3'尾巴之间存在联系。
 
在这项研究中发现的未知转录本和RNA修饰的功能研究将为人们对SARS-CoV-2的生命周期和致病性的理解开辟新的方向。
 
SARS-CoV-2是导致COVID-19大流行的乙型冠状病毒。尽管最近报道了SARS-CoV-2基因组,但其转录组结构尚不清楚。
 
附:英文原文

Title: The Architecture of SARS-CoV-2 Transcriptome

Author: Dongwan Kim, Joo-Yeon Lee, Jeong-Sun Yang, Jun Won Kim, V. Narry Kim, Hyeshik Chang

Issue&Volume: 2020-04-23

Abstract: SARS-CoV-2 is a betacoronavirus responsible for the COVID-19 pandemic. Although the SARS-CoV-2 genome was reported recently, its transcriptomic architecture is unknown. Utilizing two complementary sequencing techniques, we present a high-resolution map of the SARS-CoV-2 transcriptome and epitranscriptome. DNA nanoball sequencing shows that the transcriptome is highly complex owing to numerous discontinuous transcription events. In addition to the canonical genomic and 9 subgenomic RNAs, SARS-CoV-2 produces transcripts encoding unknown ORFs with fusion, deletion, and/or frameshift. Using nanopore direct RNA sequencing, we further find at least 41 RNA modification sites on viral transcripts, with the most frequent motif, AAGAA. Modified RNAs have shorter poly(A) tails than unmodified RNAs, suggesting a link between the modification and the 3′ tail. Functional investigation of the unknown transcripts and RNA modifications discovered in this study will open new directions to our understanding of the life cycle and pathogenicity of SARS-CoV-2.

DOI: 10.1016/j.cell.2020.04.011

Source: https://www.cell.com/cell/fulltext/S0092-8674(20)30406-2

Cell:《细胞》,创刊于1974年。隶属于细胞出版社,最新IF:66.85
官方网址:https://www.cell.com/
投稿链接:https://www.editorialmanager.com/cell/default.aspx

本期文章:《细胞》:Online/在线发表

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