http://www.cell.com/immunity/abstract/S1074-7613(10)00320-1#aff2

http://arrowsmith.psych.uic.edu/cgi-bin/arrowsmith_uic/edit_b.cgi

Start A-Literature C-Literature B-list Filter Literature

A-query: Integrin C-query: Neutrophil The B-list contains title words and phrases (terms) that appeared in both the A and the C literature. 4276 articles appeared in both literatures and were not included in the process of computing the B-list but can be viewed here. The results of this search are saved under id # 14106 and can be accessed from the start page after you leave this session. There are 2788 terms on the current B-list (26 are predicted to be relevant), which is shown ranked according to predicted relevance. The list can be further trimmed down using the filters listed in the left margin. To assess whether there appears to be a biologically significant relationship between the AB and BC literatures for specific B-terms, please select one or more B-terms and then click the button to view the corresponding AB and BC literatures. Use Ctrl to select multiple B-terms.

job id # 14106 started Fri Jan 28 23:55:04 2011
Max_citations: 50000
Stoplist: /var/www/html/arrowsmith_uic/data/stopwords_pubmed
Ngram_max: 3
14106 Search ARROWSMITH A
A_query_raw: IntegrinFri Jan 28 23:55:27 2011

A query = Integrin started Fri Jan 28 23:55:27 2011
A query resulted in 48186 titles
14106 Search ARROWSMITH C
C_query_raw: Neutrophil Fri Jan 28 23:55:59 2011

C: Neutrophil 107130

A: pubmed_query_A 48186

AC: ( Integrin ) AND ( Neutrophil ) 4276

C query = Neutrophil started Fri Jan 28 23:56:00 2011
C query resulted in 50000 titles
A AND C query resulted in 4276 titles
52989 B-terms ready on Sat Jan 29 00:06:52 2011

Sem_filter:
Genes & Molecular Sequences, and Gene & Protein Names
2788 B-terms left after filter executed Sat Jan 29 00:43:50 2011

2788 B-terms left after filter executed Sat Jan 29 00:44:14 2011

B-list on Sat Jan 29 00:46:49 2011
1 cox-2
2 nod2
3 adiponectin
4 toll receptor
5 rankl
6 stat5
7 cd86
8 jnk
9 wnt
10 tlr4
11 c ebp
12 jak2
13 smad3
14 ccaat enhancer binding
15 paxillin
16 akt
17 vegf
18 caspase-8
19 nod scid
20 angiopoietin
21 mtor
22 cd38
23 stat3
24 erk1
25 adenovirus mediated gene
26 ikappab