Start A-Literature C-Literature B-list Filter Literature

A-query: microarray C-query: hypothesis testing The B-list contains title words and phrases (terms) that appeared in both the A and the C literature. 128 articles appeared in both literatures and were not included in the process of computing the B-list but can be viewed here. The results of this search are saved under id # 24234 and can be accessed from the start page after you leave this session. There are 1640 terms on the current B-list (684 are predicted to be relevant), which is shown ranked according to predicted relevance. The list can be further trimmed down using the filters listed in the left margin. To assess whether there appears to be a biologically significant relationship between the AB and BC literatures for specific B-terms, please select one or more B-terms and then click the button to view the corresponding AB and BC literatures. Use Ctrl to select multiple B-terms.

 

job id # 24234 started Sun Dec 26 21:24:53 2010
Max_citations: 50000
Stoplist: /var/www/html/arrowsmith_uic/data/stopwords_pubmed
Ngram_max: 3
24234 Search ARROWSMITH A
A_query_raw: microarray Sun Dec 26 21:26:15 2010

A query = microarray started Sun Dec 26 21:26:15 2010
A query resulted in 39857 titles
24234 Search ARROWSMITH C
C_query_raw: hypothesis testing Sun Dec 26 21:26:26 2010

C: hypothesis testing 11558

A: pubmed_query_A 39857

AC: ( microarray ) AND ( hypothesis testing ) 128

C query = hypothesis testing started Sun Dec 26 21:26:26 2010
C query resulted in 11558 titles
A AND C query resulted in 128 titles
20868 B-terms ready on Sun Dec 26 21:30:39 2010

Sem_filter:
Genes & Molecular Sequences, and Gene & Protein Names
1640 B-terms left after filter executed Sun Dec 26 22:22:08 2010

1640 B-terms left after filter executed Sun Dec 26 22:22:09 2010

1640 B-terms left after filter executed Sun Dec 26 22:22:13 2010

B-list on Sun Dec 26 22:24:06 2010
1 brca2
2 brca1
3 genome scan
4 quantitative trait loci
5 single nucleotide polymorphism
6 drb1
7 microsatellite
8 gene ontology
9 quantitative trait locus
10 abca4
11 transporter gene
12 hepcidin
13 her-2 neu
14 cdkn2a
15 cox-2
16 promoter polymorphism
17 hla drb1
18 rankl
19 her2
20 jnk
21 mtor
22 caspase
23 pten
24 her-2
25 cyp2d6
26 akt
27 stat1
28 homeobox gene
29 mlh1
30 gene schizophrenia
31 adiponectin
32 homeobox
33 kai1
34 hla g
35 angiopoietin
36 nf2
37 stat3
38 wfs1
39 frataxin
40 map kinase
41 gdnf
42 cdna
43 fmr1
44 wnt
45 matrix metalloproteinase
46 serial analysis gene
47 aryl hydrocarbon receptor
48 differentially expressed gene
49 ret
50 leptin
51 runx2
52 operon
53 wt1
54 erbb2
55 myostatin
56 ppar
57 c myc
58 circadian gene
59 sod1
60 braf
61 metabolic syndrome
62 genome duplication
63 immediate early gene
64 gene family
65 early gene
66 genome wide
67 mt1-mmp
68 nkt
69 p38
70 ink4a
71 huntingtin
72 nf1
73 msh2
74 chemokine
75 16s
76 nf kappab
77 bdnf
78 snp
79 cftr
80 fhit
81 estrogen receptor alpha
82 tumor suppressor gene
83 abcr
84 mek
85 amphiregulin
86 virulence gene
87 cd34
88 gene cluster
89 receptor tyrosine kinase
90 carboxypeptidase e
91 p16 ink4a
92 card15
93 candidate gene
94 multigene
95 ltp
96 e6
97 ubiquitin conjugating enzyme
98 gstm1
99 hepatocyte growth factor
100 nod2
101 cadherin
102 cd117
103 rnai
104 tata binding protein
105 ghrelin
106 cancer susceptibility gene
107 ppar alpha
108 brca1 gene
109 socs3
110 ubiquitin
111 ppar gamma
112 p27
113 myocilin
114 p53 gene
115 gp120
116 connexin
117 transcription factor
118 microrna
119 xrcc1
120 sp1
121 ets
122 hnf-1alpha
123 polymorphism gene
124 fgfr3
125 aml1
126 gene environment
127 activin
128 autotaxin
129 gene associated schizophrenia
130 gene encoding
131 kappab gene
132 estrogen receptor beta
133 egfr
134 e selectin
135 il-8
136 e virus
137 cd8
138 fibrosis transmembrane conductance
139 contextual fear conditioning
140 e cadherin
141 susceptibility gene
142 progesterone receptor
143 igfbp-3
144 hox
145 gene breast cancer
146 tgf beta
147 enhancer
148 psa
149 nicotinamide n methyltransferase
150 chaperone
151 response element
152 erbb3
153 dqb1
154 exon
155 nod scid mice
156 polymorphism promoter
157 egfr tyrosine kinase
158 hla a
159 p16
160 traf2
161 nrf2
162 polycystic ovary syndrome
163 hdac6
164 nf1 gene
165 rrna
166 hfe
167 dmd
168 statin
169 caspase-3
170 reelin
171 signaling gene
172 cell cycle progression
173 serca2a
174 mrsa
175 slc26a4
176 estrogen receptor
177 e4 allele
178 dc sign
179 e7
180 foxp2
181 growth factor gene
182 gene association
183 exonic splicing enhancer
184 bcl xl
185 bax
186 endostatin
187 erbb-2
188 gucy2d
189 cx3cl1
190 schizophrenia susceptibility gene
191 dna repair gene
192 tenascin c
193 proneural gene
194 bp180
195 p300
196 titin
197 apc gene
198 cd11b
199 tyrosine kinase
200 calcium sensing receptor
201 mdr1
202 tumor suppressor
203 hdm2
204 vpr
205 urocortin
206 anova
207 myc gene
208 tnf alpha
209 resistance gene
210 gene transcript
211 polyposis coli gene
212 cd4
213 nf2 gene
214 human genome
215 imprinted gene
216 il-1beta
217 coli gene
218 intron
219 myc
220 rdna
221 tnfalpha
222 macrophage activation
223 cannabinoid receptor
224 abeta
225 caga
226 comt
227 histone deacetylase
228 peroxisome
229 nod
230 cytokine production
231 novel gene
232 rna binding protein
233 ccnd1
234 genomic library
235 p53
236 rpe65
237 aggrecan
238 cdkn1c
239 bmd
240 gene ovarian cancer
241 gad65
242 tag-72
243 factor gene
244 chemokine receptor
245 il-10
246 androgen receptor
247 bcl2
248 pkb akt
249 gelsolin
250 notch
251 caveolin-3
252 ifn
253 analysis gene
254 il-18
255 fhit gene
256 neu
257 sib
258 mitochondrial genome
259 hmga2
260 receptor gene expression
261 oncogene
262 gene colorectal cancer
263 tcdd
264 prion protein
265 th2
266 receptor gene
267 hdl
268 hupo
269 oct4
270 prb
271 methylation gene
272 rna binding
273 based snp
274 th1
275 mmp-1
276 gene autism
277 b27
278 ube3a
279 topoisomerase
280 math1
281 retinal degeneration
282 ror2
283 dna methylation gene
284 pseudogene
285 cell adhesion molecule
286 pink1
287 gene silencing
288 antioxidant response element
289 rho kinase
290 fuzzy
291 troponin
292 cytochrome p450
293 ivf
294 retinoic acid receptor
295 sos
296 angiotensin receptor
297 t7
298 oncogene tumor suppressor
299 mmp
300 protein sequence
301 ca1
302 hla
303 phospholamban
304 methylenetetrahydrofolate reductase
305 rt
306 gene associated
307 suppressor gene
308 str
309 glucocorticoid receptor
310 diabetic nephropathy
311 gene multiple sclerosis
312 ca125
313 pcr
314 ifn gamma
315 vitamin d receptor
316 igf
317 spatial learning
318 gene gastric
319 autophagy
320 apolipoprotein e
321 gene colorectal
322 erk
323 neu amplification
324 inflammatory gene
325 mitochondrial gene
326 c kit
327 tnf
328 based microsatellite
329 cyp1a1
330 cd59
331 retrotransposon
332 gene involved
333 epidermal growth factor
334 hox gene
335 uchl1
336 cd44
337 related gene
338 p450
339 cytokine
340 gene related
341 adenosine a2a receptor
342 leber congenital amaurosis
343 bcr abl
344 connexin43
345 integrin
346 cell cycle gene
347 analysis gene array
348 disease gene
349 caspase-2
350 selenoprotein
351 parkin
352 bcr
353 gene ovarian
354 cdk5
355 udp glucuronosyltransferase
356 bone morphogenetic protein
357 dynamin
358 trkb
359 extracellular matrix protein
360 plasticity related gene
361 gene bipolar
362 galectin
363 atopy
364 telangiectasia mutated gene
365 protein tyrosine phosphatase
366 haloperidol induced catalepsy
367 repetitive dna sequence
368 ctl
369 pcc
370 bacterial genome
371 genome based expression
372 insulin growth factor
373 nf
374 operon transcriptional
375 intron length
376 premature ovarian failure
377 gene japanese
378 uncoupling protein
379 rag1
380 heat shock protein
381 fdg
382 vaca
383 based allele
384 gene alzheimer
385 4p
386 c fos
387 motor neuron disease
388 foxg1
389 allelic variation
390 il-6
391 arabidopsis thaliana gene
392 methyltransferase
393 p53 tumor suppressor
394 mcp-1
395 fasl
396 allele
397 gene promoter
398 tyrosine phosphatase
399 xrcc3
400 wilm tumor
401 mannose binding lectin
402 interferon gamma
403 endothelin
404 tof
405 genomic imprinting
406 d3 receptor
407 helix turn helix
408 enzyme gene
409 trinucleotide repeat
410 pai-1
411 promoter
412 trail
413 n methyltransferase
414 diazepam binding inhibitor
415 aromatase
416 bcl
417 angiotensinogen gene
418 corticotropin releasing hormone
419 hla e
420 clock
421 epigenetic gene
422 glioma
423 lmna
424 mc1r
425 human gene
426 gene variant
427 sdhd
428 allelic
429 promoter region
430 xpa
431 meningioma
432 ssri
433 drd2
434 sars
435 reporter gene
436 il-12
437 p selectin
438 inferring gene
439 snca
440 myc oncogene
441 cox
442 gene primary hyperparathyroidism
443 apoe
444 isoform
445 igf i
446 factor kappab gene
447 ataxia telangiectasia mutated
448 abl
449 galanin
450 protein kinase
451 rapd
452 trka
453 ccr5
454 nr2b
455 transporter
456 s100
457 cd40
458 frameshift
459 adaptor
460 hsp90
461 globin gene
462 heme oxygenase
463 n cadherin
464 cleft lip
465 myopia
466 retinitis pigmentosa
467 igfbp-4
468 codon
469 impaired glucose tolerance
470 ampa
471 bone mineral density
472 gene chromosome
473 hemochromatosis
474 l myc
475 kit
476 c cbl
477 dopamine receptor
478 inflammatory bowel disease
479 gabaa
480 histocompatibility complex class
481 smurf1
482 linked gene
483 syndrome gene
484 subunit gene
485 seq
486 cd28
487 huntington disease
488 genetic code
489 gene p53
490 ugt2b17
491 gene associated bone
492 hyperparathyroidism
493 melanocortin receptor
494 filaggrin
495 wnt7a
496 tachykinin
497 ho-1
498 copd
499 gene cystic fibrosis
500 ctla4
501 her2 oncogene
502 s100b
503 genomic
504 cll
505 patched
506 anxiety related behavior
507 gene array
508 d1
509 tandem repeat
510 obese
511 il6
512 copy
513 neurotrophic factor gene
514 proinsulin
515 lps
516 lamin a c
517 cue
518 insulin receptor
519 nodal
520 shear
521 erbb
522 prostate cancer
523 analysis genome
524 arabinogalactan protein
525 glycogen synthase
526 bomb
527 glutamate receptor
528 reelin gene
529 pup
530 dioxygenase gene
531 fibroblast growth factor
532 adrb2
533 receptor kinase
534 gonadotropin releasing hormone
535 angiotensinogen
536 ornithine transcarbamylase
537 gaba a
538 il-17
539 gene response
540 vitronectin
541 ras
542 alzheimer disease
543 p glycoprotein
544 olfactory
545 promoter variant
546 early promoter
547 transposable element
548 senescence
549 association genome wide
550 gene pard3
551 xenobiotic metabolizing gene
552 lh
553 sumo1
554 mef2a
555 spinocerebellar ataxia
556 gene involved methionine
557 histone
558 paraoxonase
559 neurofibromatosis gene
560 gene transgenic
561 relation brca1
562 factor promoter
563 topoisomerase i
564 igf1r
565 conserved genomic
566 oncogene human
567 opioid receptor
568 thioredoxin
569 protein gene
570 tag
571 msh2 gene
572 hmgb1
573 anca
574 detection tumor suppressor
575 duplicate gene increase
576 lactase
577 myosin heavy chain
578 nr2a
579 transgene
580 igf-1
581 rna polymerase
582 btg1
583 metallothionein
584 hyperinsulinemia
585 rante
586 neurotrophin
587 biased gene
588 decorin
589 parvalbumin
590 il-12p40
591 gene a
592 e gene
593 d3
594 sf2
595 gaba a receptor
596 exonuclease
597 alfa
598 ip-10
599 interleukin
600 genome
601 egf
602 fgf2
603 nima
604 tgf alpha
605 bee
606 protein kinase c
607 retinoblastoma
608 deafness gene
609 icos
610 cd31
611 amyloid a
612 dna sequence
613 alpha7
614 glyoxalase i
615 c lectin
616 jc
617 lectin
618 vasp
619 glass
620 gene haplotype
621 adhd
622 pkb
623 craniosynostosis
624 grb10
625 catechol o-methyltransferase
626 lip
627 db
628 igfbp-5
629 somatostatin receptor
630 rna
631 radiation induced apoptosis
632 max
633 factor v
634 neuropeptide y
635 trna
636 replicase
637 nnos
638 cathepsin k
639 polymorphism human gene
640 altered gene
641 gpcr
642 trait
643 cd11b cd18
644 cuff
645 insulin gene
646 tau protein
647 pmma
648 inducible
649 growth hormone receptor
650 gene coding
651 er
652 variant gene
653 transmembrane protein
654 nude
655 oscillator
656 hla gene
657 rna sequence
658 thyrotropin releasing hormone
659 tau gene
660 p13
661 dst
662 interferon gamma receptor
663 determining gene
664 ldl
665 p21
666 huntington
667 calcium channel
668 cml
669 suppressor gene p53
670 gnrh
671 mrp2
672 locus
673 oxytocin receptor
674 iiia
675 rank
676 dynein
677 dr4
678 app
679 akt1
680 interleukin-10 gene
681 polycystic kidney disease
682 laterality
683 interferon
684 hsp27

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Start A-Literature C-Literature B-list Filter Literature

AB literature   B-term   BC literature   microarray brca2 hypothesis testing 1: Phytoestrogens regulate the expression of genes involved in different biological processes in BRCA2 knocked down MCF-7, MDA-MB-231 and MCF-10a cell lines. 2010 Add to clipboard 2: Transcriptional characteristics of familial non-BRCA1/BRCA2 breast tumors. 2010 Add to clipboard 3: Arabidopsis BRCA2 and RAD51 proteins are specifically involved in defense gene transcription during plant immune responses. 2010 Add to clipboard 4: Detection and precise mapping of germline rearrangements in BRCA1, BRCA2, MSH2, and MLH1 using zoom-in array comparative genomic hybridization (aCGH). 2008 Add to clipboard 5: Novel de novo BRCA2 mutation in a patient with a family history of breast cancer. 2008 Add to clipboard 6: BRCA2 mutation-associated breast cancers exhibit a distinguishing phenotype based on morphology and molecular profiles from tissue microarrays. 2007 Add to clipboard 7: Accurate prediction of BRCA1 and BRCA2 heterozygous genotype using expression profiling after induced DNA damage. 2006 Add to clipboard 8: Histopathological features of breast tumours in BRCA1, BRCA2 and mutation-negative breast cancer families. 2005 Add to clipboard 9: Down-regulation of UCRP and UBE2L6 in BRCA2 knocked-down human breast cells. 2005 Add to clipboard 10: Phenotypic characterization of BRCA1 and BRCA2 tumors based in a tissue microarray study with 37 immunohistochemical markers. 2005 Add to clipboard 11: Relationship of patients' age to histopathological features of breast tumours in BRCA1 and BRCA2 and mutation-negative breast cancer families. 2005 Add to clipboard 12: Molecular classification of familial non-BRCA1/BRCA2 breast cancer. 2003 Add to clipboard 13: Immunohistochemical characteristics defined by tissue microarray of hereditary breast cancer not attributable to BRCA1 or BRCA2 mutations: differences from breast carcinomas arising in BRCA1 and BRCA2 mutation carriers. 2003 Add to clipboard 14: Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. 2000 Add to clipboard 15: Mutation detection in K-ras, BRCA1, BRCA2, and p53 using PCR/LDR and a universal DNA microarray. 2000 Add to clipboard

 

 

 

 

 

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